2020-06-15

miRSel: documental database with associations between miRNAs and their targets using bibliographical searches. miRSel is updated daily and can be queried using a web-based interface via microRNA identifiers, gene and protein names, PubMed queries as well as gene ontology (GO) terms.

Genes: Search by most common gene identifiers, see examples: Official symbol: LARP7; TP53 | Entrez gene: 51574; 7157 | Ensembl HMDD (the Human microRNA Disease Database) is a resource that curates experimentally supported miRNA and disease association data. HMDD was originally constructed on December 2007 and was updated more than 30 times during the past ten years. On June 2013, we released HMDD version 2 (HMDD v2.0). Welcome to the plant microRNA database (PMRD) homepage! MicroRNAs play an essential role in regulating plant growth and development and recently research in microRNAs has made great progress.

Microrna database

For intragenic microRNAs, it is possible to verify whether or not a particular microRNA is located within the same gene in different species as well as to establish whether its position within the host gene (e.g., exonic, intronic, etc.) is also conserved. The RumimiR database contains an exhaustive in-depth description of the microRNAs from the literature for bovine, caprine and ovine species. It provides the integration of all the pertinent public information about dairy ruminant microRNAs in a unique place. 2009-04-01 Welcome to PmiREN. PmiREN (Plant miRNA ENcyclopedia) is a comprehensive functional plant miRNA database. In current version, PmiREN contains 20388 miRNA loci (MIRs) belonging to 5757 families, 1365 clusters, 1668 syntenic blocks and 141327 predicted miRNA-target pairs in 88 species phylogenetically ranging from chlorophytes to angiosperms. In addition, 1537 deeply sequenced small RNA libraries 2008-10-06 2015-06-01 miRNEST is an integrative collection of animal, plant and virus microRNA data.

We used the Human microRNA Disease Database (HMDD) to discover miRNAs which shared expression patterns in the related diseases of ischemia/reperfusion injury, coronary artery disease, stroke, and obesity as a model to identify miRNA candidates for biomarker and/or therapeutic intervention in complex human diseases.

thaliana) and rice (O. sativa). Four major functional modules such as SNPs, Pri-miR, MiR–Tar, Self-reg are included.

2020-06-15 · miRCancer : microRNA Cancer Association Database miRCancer provides comprehensive collection of microRNA (miRNA) expression profiles in various human cancers which are automatically extracted from published literatures in PubMed. It utilizes text mining techniques for information collection.

The Dietary microRNA Database is a searchable database of published and novel microRNA sequences discovered in human food. The annotation covers the hairpin structure of the pre-microRNAs, cross-species sequence comparison on each mature microRNA, reported disease relevance, and the experimentally validated gene targets, of which a gene regulation network was built for each entry. 2020-03-18 · To facilitate interpretation of microRNA studies in these tissues, we used previously generated data to develop a publicly accessible and user-friendly database to enable exploration of cell type Welcome to PmiREN. PmiREN (Plant miRNA ENcyclopedia) is a comprehensive functional plant miRNA database. In current version, PmiREN contains 20388 miRNA loci (MIRs) belonging to 5757 families, 1365 clusters, 1668 syntenic blocks and 141327 predicted miRNA-target pairs in 88 species phylogenetically ranging from chlorophytes to angiosperms.

This database contains sequence information, secondary structure, target genes, expression profiles and a genome browser. miRandb: a Resource of Online Services for miRNA Research, Aghaee-Bakhtiari SH, Arefian E, Lau P.Brief Bioinform. 2017 Jan 3. pii: bbw109. doi: 10.1093/bib/bbw109 Owing to the biological significance of miRNAs, miRTarBase was developed to provide comprehensive information on experimentally validated miRNA-target interactions (MTIs). To date, the database has accumulated >13,404 validated MTIs from 11,021 articles from manual curations. Welcome to PmiREN.
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miRDB is an online database for miRNA target prediction and functional annotations.

In recent years, research into the mechanism and consequences of miRNA action has mad … PMRD: Plant microRNA Database Welcome to MirGeneDB2.0 - the curated microRNA Gene Database. MirGeneDB is a database of microRNA genes that have been validated and annotated as described in "A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome".* The initial version contained 1,434 microRNA genes for human, mouse, chicken and zebrafish. miRDB is an online database for miRNA target prediction and functional annotations. All the targets in miRDB were predicted by a bioinformatics tool, MirTarget, which was developed by analyzing thousands of miRNA-target interactions from high-throughput sequencing experiments.
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Nov 24, 2020 “A unified and publicly available database like the RCSB PDB didn't exist during the spanish flu nor the bubonic plague … it enables scientists

The target predictions of microRNAs are performed by a development of the miRanda algorithm, and microRNA expression profiles are derived from a comprehensive sequencing project of a large set of mammalian tissues and cell lines of normal and disease origin. 2015-06-01 · Dietary MicroRNA Database (DMD): An Archive Database and Analytic Tool for Food-Borne microRNAs. Chiang K(1), Shu J(1), Zempleni J(2), Cui J(1). Author information: (1)Department of Computer Science and Engineering, University of Nebraska-Lincoln, Lincoln, NE, United States of America.

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The arsenal of DIANA Tools ranges from target prediction algorithms (microT v4 and microT-CDS), databases of experimentally verified miRNA targets on

Juridical person:Västra Götalandsregionen I am Molecular Biologist by training and use bioinformatics methods for genome wide pan-metazoan miRNA complement analyses. I am experienced in working keywords = "MicroRNA, Sequencing, Music-performance, Gene regulation, TRANSCRIPTOME, DATABASE, EXERCISE, BEHAVIOR, 3111 Biomedicine",. eWRC-results.com - rally database. PDF) Significant changes in circulating microRNA by dietary Varsågod Originalet Mikael Walfridsson Pastor pic.

Nov 4, 2019 Thus, despite integrating information from different databases can be useful to cut down the number of miRNA-target interactions to be

sativa). Four major functional modules such as SNPs, Pri-miR, MiR–Tar, Self-reg are included. P III 2010 2011 miRTarBase miRTarBase is a database collecting the experimentally validated microRNA-target interactions (MTIs). HMDD (the Human microRNA Disease Database) is a resource that curates experimentally supported miRNA and disease association data.

The annotation covers the hairpin structure of the pre-microRNAs, cross-species sequence comparison on each mature microRNA, reported disease relevance, and the experimentally validated gene targets, of which a gene regulation network was built for each entry. Database of experimentally supported microRNA targets. TarBase v7.0 is the largest available manually curated target database, indexing more than 65,000 miRNA-gene interactions, 16.5-175-fold more than any other available implementation. Search instruction - Step 1: Identify a miRNA of interest. Step 2: Select a cell line of interest for target prediction. For target expression analysis, the expression levels of … 2015-06-01 I am trying to use miRanda database ( http://www.microrna.org/), but this database is out of reach. Is that the same for you?